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Public Datasets

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Brainstem neuron recordings - Morris Lab USF

Simultaneously recorded cat brainstem neuron extracellular potentials with nerves and sorted spike trains
178 Files
2.21 TB
39 Records
CC-BY-4.0
Kendall Morris updated on October 27, 2019
felis catus, trachea, brainstem + More
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Rat vagus nerve morphology

Micrographs of cross sections of cervical and abdominal rat vagus nerve stained with Masson's trichrome.
107 Files
3.74 GB
66 Records
CC-BY-4.0
Nikki Pelot updated on October 7, 2019
neural anatomy, vagus nerve morphology, autonomic nervous system + More
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Selectivity of afferent microstimulation at the DRG using epineural and penetrating electrode arrays

This dataset contains over 50,000 instances of compound action potentials recorded in response to stimulation at the DRG via epineural and penetrating electrodes from nerve cuffs implanted on several distal branches of the sciatic and femoral nerve
94,990 Files
8.48 GB
89,999 Records
CC-BY-4.0
Ameya Nanivadekar updated on September 30, 2019
drg, compound action potential, selectivity + More
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Characterizing the effect of feeding distension and emetic stimuli on gastric myoelectric activity in ferrets

This dataset contains gastric myoelectric activity recorded from multi-electrode arrays, surgically implanted on the serosal surface of the GI tract to study perturbations due to mechanical or chemical stimuli in acute and chronic preparations of ferrets
20,285 Files
364.41 GB
20,332 Records
CC-BY-4.0
Ameya Nanivadekar updated on September 25, 2019
ferret, emesis, distension + More
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Molecular Phenotype Distribution of Single Rat ICN Neurons

Intracardiac neuron (ICN) samples were collected from a female rat heart using laser capture microdissection. We acquired transcriptomics data for 154 genes from the 151 samples we collected. Images of sampled neurons allow for 3D reconstruction of data.
2,156 Files
48.5 GB
200 Records
CC-BY-4.0
Alison Moss updated on August 30, 2019
rattus norvegicus, sprague dawley, heart + More
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3D Visualization

Three-dimensional representation of the effects of a stimulating electrode around a bundle of nerve fibers. Caption: Image of neuron stimulation model with electric field lines and gradient.
4 Files
33.26 KB
No Records
MIT
Ignacio Pascual updated on August 15, 2019
simcore, osparc, electrical stimulation + More
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Mapping of ICN Neurons in a 3D Reconstructed Rat Heart

The distribution of neurons in the intrinsic cardiac nervous system (ICN) were mapped and visualized in a 3D reconstruction of a male rat heart.
9 Files
55.71 GB
No Records
CC-BY-4.0
Clara Leung updated on August 14, 2019
heart, anatomy, 3d reconstructed heart + More
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Multi-scale human cardiac electrophysiology models

A computational workflow for integration and implementation of a reusable and reproducible human cardiac multi-scale electrophysiology model. Caption: Illustration of ion channels and action potential propogation in cardiac tissue
4 Files
127.1 KB
No Records
MIT
Ignacio Pascual updated on August 14, 2019
osparc, simcore, cardiac electrophysiology + More
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Multi-scale rabbit cardiac electrophysiology models

A computational workflow for integration and implementation of a reusable and reproducible rabbit cardiac multi-scale electrophysiology model. Caption: Illustration of ion channels and action potential propogation in cardiac tissue
4 Files
124.53 KB
No Records
MIT
Manuel Guidon updated on August 14, 2019
simcore, osparc, computational workflows + More
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Small Enteric Neural Network Simulator

This network is designed to study the interactions of different types of synaptic potentials in a realistic enteric neuron and the effects of varying the voltage-dependent ion channels in the output neuron membrane. Caption: Simulated neuron voltage
4 Files
25.07 KB
No Records
MIT
Ignacio Pascual updated on August 5, 2019
osparc, simcore, network simulator + More
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CLARITY and three-dimensional (3D) imaging of the mouse and porcine colonic innervation

Regional ENS 3D structure/phenotype, axonal projections and connectivity in the mouse and pig colon.
25 Files
35.44 MB
28 Records
CC-BY-4.0
Pu-Qing Yuan updated on July 25, 2019
obsolete peritreme, large intestine, electron microscope + More
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Identification of peripheral neural circuits that regulate heart rate using optogenetic and viral vector strategies

iDISCO-cleared mouse hearts with PGP9.5 staining for neural structures.
41 Files
7.22 GB
34 Records
CC-BY-4.0
Pradeep Rajendran updated on July 25, 2019
mus musculus, adult organism, immunolabeling + More
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Cardioneural Recordings

Methodology of neural recordings using array electrodes. How to analyze for signal to noise, spike sorting and higher level analysis.
45 Files
1.64 GB
32 Records
CC-BY-4.0
Leonardo Guercio updated on July 25, 2019
myocardium of atrium, heart, nodose ganglion + More
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Spatial distribution and morphometric characterization of vagal afferents associated with the myenteric plexus of the rat stomach

Spatial distribution and morphometric characterization of vagal afferents (specifically: intraganglionic laminar endings (IGLEs)) associated with the myenteric plexus of the rat stomach.
269 Files
538.38 MB
84 Records
CC-BY-4.0
Bartek Rajwa updated on July 25, 2019
stomach, vagal, afferent + More
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Influence of left vagal stimulus pulse parameters on vagal and gastric activity in rat

Influence of left vagal stimulus pulse parameters on vagal and gastric activity in rat.​
119 Files
41.26 MB
51 Records
CC-BY-4.0
Bartek Rajwa updated on July 25, 2019
vagus nerve stimulation, vns, gastric electrical stimulation + More
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Spatial distribution and morphometric characterization of vagal afferents (intramuscular arrays (IMAs)) within the longitudinal and circular muscle layers of the rat stomach

Spatial distribution and morphometric characterization of vagal afferents (specifically: intramuscular arrays (IMAs)) within the longitudinal and circular muscle layers of the rat stomach.
389 Files
1.08 GB
156 Records
CC-BY-4.0
Bartek Rajwa updated on July 25, 2019
stomach, vagal, afferent + More
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Distribution of Nitregic Cholinergic and all MP Neurons

Contains source data and reconstructed images of nNOS, cholinergic and glial distribution in the murine large intestine.
66 Files
147.09 GB
2 Records
CC-BY-4.0
Dante Heredia updated on July 25, 2019
large intestine, neuron distribution, murine enteric nervous system + More
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Immunocytochemistry Pig Heart ICN

Pig ICN Confocal Immunocytochemistry. Yucatan Pigs fixed and RAGP region excised sectioned. Stained with Ab to determine morphology, phenotype present. Compare and contrast to other ICN supportive of functional data.
24 Files
550.92 MB
9 Records
CC-BY-4.0
Gabrielle Pine updated on July 23, 2019
ragp, heart, immunocytochemistry + More
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Influence of direct colon tissue electrical stimulation on colonic motility in anesthetized male Yucatan minipig

Direct proximal colon, transverse colon and colorectum wall electrical stimulation; monitor colon wall bio-impedance and colon manometry in all regions (proximal, transverse and distal) before, during and post stimulation.
171 Files
64.04 GB
192 Records
CC-BY-4.0
Muriel Larauche updated on July 23, 2019
large intestine, sense organ, sus scrofa + More
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High resolution manometry

Organ bath studies of motility recorded from entire sections surgically excised human colon.
84 Files
379.84 MB
50 Records
CC-BY-4.0
Phil Dinning updated on July 23, 2019
colon, manometry, neurogenic + More
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Anatomical Model Viewer

Render different human tissue types in three dimensions with the option to highlight or segment parts of: musculature, vasculature, nerve tissue, viscera and skeletal structure. Caption: Screenshot of anatomical viewer with subject Jeduk
4 Files
31.39 KB
No Records
MIT
Ignacio Pascual updated on July 22, 2019
osparc, simcore, anatomy + More
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2D Plot

Interactive example for plotting gene expression using the RAW Graphs platform. Data are obtained from Prof. Leah Reznikov at University of Florida. Caption: Plot created using O2S2PARC platform with RAW Graphs
4 Files
64.28 KB
No Records
MIT
Ignacio Pascual updated on July 22, 2019
osparc, simcore, raw graphs
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SPARC Nerve Activity Predictor (SNAP)

Interactive, AI-informed computational model of stimulus parameter-dependent vagal nerve responses resulting from bipolar, constant-current stimuli. Caption: Simulation of compound action potential propagation
4 Files
25.17 KB
No Records
MIT
Ignacio Pascual updated on July 22, 2019
simcore, osparc, vagus nerve + More
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opencor-py model

Computes the cardiac myocyte action potential for the sympathetic drive input setting on the MAP-Core portal. Caption: Illustration of a whole body flatmap (centre) and central nervous system map (left) with a neural pathway highlighted.
4 Files
81.81 KB
No Records
MIT
Ignacio Pascual updated on July 22, 2019
osparc, simcore, pacemaker + More
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Quantification of rat gastric enteroendocrine cells

Enteroendocrine cells (EEC) are cells found in the gut that secrete hormones. This data describes EECs within the rat stomach, including their hormone content, shapes, positions within the mucosa, relationship to other cells and regional distribution.
430 Files
27.87 GB
64 Records
CC-BY-4.0
Martin Stebbing updated on July 19, 2019
enteroendocrine cells, gastrointestinal hormones, ghrelin + More
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