Generic pig heart scaffold

Study Purpose: The goal of this work is to create annotated generic pig heart scaffolds for registration of segmented data obtained by experimental groups.

Data Collected: The generic scaffold is created based on the general description and average dimensions of pig hearts as in the literature data.

Primary Conclusion: None stated

Curator’s Notes

Experimental design: Not applicable.

Completeness: The study is ongoing and potentially will link to other datasets where the data is used for mapping onto the scaffold.

Subjects & Samples: The generic scaffold is not subject/sample specific but represents a generic pig heart.

Primary vs derivative data: In the primary folder, nodal information and element connectivity of the scaffold are formatted as an exf file. Using the commands in the cmgui file, the scaffold can be visualized using open source software CMGUI. The JSON file contains the parameter settings to reproduce the scaffold in the ScaffoldMaker software. The derivative folder contains the legacy VTK format file which can be used to visualize the scaffold in many different visualization software e.g. ParaView. The Scaffold folder in the derivative folder contains the json files used to generate a visualization of the scaffold on the web portal.

Code availability: https://github.com/ABI-Software/scaffoldmaker.