Study Purpose: The goal of this work is to create an annotated generic human colon scaffold for the registration of segmented data obtained by experimental groups.
Data Collected: The generic scaffold is created based on the general description and average dimensions of human colons obtained from the literature.
Primary Conclusion: None stated
Experimental design: Not applicable.
Completeness: The study is ongoing and potentially will link to other datasets where the data is used for mapping onto the scaffold.
Subjects & Samples: The generic scaffold is not subject/sample-specific but represents an average colon of subjects used in other studies.
Primary vs derivative data: In the primary folder, nodal information and element connectivity of the scaffold are formatted as an exf file. Using the commands in the cmgui file, the scaffold can be visualized using open source software CMGUI. The primary folder also contains a json file which contains parameter settings to reproduce the scaffold in ScaffoldMaker. The derivative folder contains json files which are used to generate a visualisation of the scaffold on the web portal, as well as a vtk file for mesh visualization.
Code availability: https://github.com/ABI-Software/scaffoldmaker (ABI-Software/scaffoldmaker Anatomical scaffold generator using OpenCMISS), https://models.physiomeproject.org/e/629 (scaffold source files)
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